39template <std::ranges::view urng_t>
61 using size_type = std::ranges::range_size_t<std::ranges::range_reference_t<urng_t>>;
63 using difference_type = std::ranges::range_difference_t<std::ranges::range_reference_t<urng_t>>;
71 template <
typename,
template <
typename ...>
typename>
76 static_assert(range_dimension_v<urng_t> == 2,
77 "This adaptor only handles range-of-range (two dimensions) as input.");
78 static_assert(std::ranges::viewable_range<urng_t>,
79 "The range parameter to views::translate_join cannot be a temporary of a non-view range.");
80 static_assert(std::ranges::viewable_range<std::ranges::range_reference_t<urng_t>>,
81 "The inner range of the range parameter to views::translate_join cannot be a temporary of "
83 static_assert(std::ranges::sized_range<urng_t>,
84 "The range parameter to views::translate_join must model std::ranges::sized_range.");
85 static_assert(std::ranges::sized_range<std::ranges::range_reference_t<urng_t>>,
86 "The inner range of the range parameter to views::translate_join must model "
87 "std::ranges::sized_range.");
88 static_assert(std::ranges::random_access_range<urng_t>,
89 "The range parameter to views::translate_join must model std::ranges::random_access_range.");
90 static_assert(std::ranges::random_access_range<std::ranges::range_reference_t<urng_t>>,
91 "The inner range of the range parameter to views::translate_join must model "
92 "std::ranges::random_access_range.");
94 "The range parameter to views::translate_join must be over a range over elements of "
95 "seqan3::nucleotide_alphabet.");
112 :
urange{std::move(_urange)},
tf{_tf}
132 template <
typename rng_t>
135 std::ranges::viewable_range<rng_t> &&
186 return {*
this,
size()};
193 return {*
this,
size()};
259template <
typename urng_t>
280 template <std::ranges::range urng_t>
283 static_assert(range_dimension_v<urng_t> == 2,
284 "This adaptor only handles range-of-range (two dimensions) as input.");
285 static_assert(std::ranges::viewable_range<urng_t>,
286 "The range parameter to views::translate_join cannot be a temporary of a non-view range.");
287 static_assert(std::ranges::viewable_range<std::ranges::range_reference_t<urng_t>>,
288 "The inner range of the range parameter to views::translate_join cannot be a "
289 "temporary of a non-view range.");
290 static_assert(std::ranges::sized_range<urng_t>,
291 "The range parameter to views::translate_join must model std::ranges::sized_range.");
292 static_assert(std::ranges::sized_range<std::ranges::range_reference_t<urng_t>>,
293 "The inner range of the range parameter to views::translate_join must model "
294 "std::ranges::sized_range.");
295 static_assert(std::ranges::random_access_range<urng_t>,
296 "The range parameter to views::translate_join must model std::ranges::random_access_range.");
297 static_assert(std::ranges::random_access_range<std::ranges::range_reference_t<urng_t>>,
298 "The inner range of the range parameter to views::translate_join must model "
299 "std::ranges::random_access_range.");
301 "The range parameter to views::translate_join must be over a range over elements of "
302 "seqan3::nucleotide_alphabet.");
308 template <std::ranges::range urng_t>
311 return me(std::forward<urng_t>(urange));
Template for range adaptor closure objects that store arguments and wrap a proto-adaptor.
Definition: adaptor_from_functor.hpp:57
A CRTP base template for creating random access iterators.
Definition: random_access_iterator.hpp:42
A generic random access iterator that delegates most operations to the range.
Definition: random_access_iterator.hpp:312
The return type of seqan3::views::translate_join.
Definition: translate_join.hpp:41
const_iterator begin() const noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition: translate_join.hpp:165
std::ranges::range_size_t< std::ranges::range_reference_t< urng_t > > size_type
The size_type.
Definition: translate_join.hpp:61
view_translate_join() noexcept=default
Defaulted.
small_vector< translation_frames, 6 > selected_frames
The selected frames corresponding to the frames required.
Definition: translate_join.hpp:48
view_translate_single< std::views::all_t< std::ranges::range_reference_t< urng_t > > > reference
The reference_type.
Definition: translate_join.hpp:55
std::ranges::range_difference_t< std::ranges::range_reference_t< urng_t > > difference_type
A signed integer type, usually std::ptrdiff_t.
Definition: translate_join.hpp:63
iterator begin() noexcept
Returns an iterator to the first element of the container.
Definition: translate_join.hpp:159
const_iterator end() const noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition: translate_join.hpp:190
size_type size() noexcept
Returns the number of elements in the view.
Definition: translate_join.hpp:208
urng_t urange
The data members of view_translate_join.
Definition: translate_join.hpp:44
reference operator[](size_type const n)
Return the n-th element.
Definition: translate_join.hpp:238
const_reference operator[](size_type const n) const
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition: translate_join.hpp:247
size_type size() const noexcept
This is an overloaded member function, provided for convenience. It differs from the above function o...
Definition: translate_join.hpp:214
translation_frames tf
The frames that should be used for translation.
Definition: translate_join.hpp:46
view_translate_join(rng_t &&_urange, translation_frames const _tf=translation_frames::six_frames)
Construct from another range.
Definition: translate_join.hpp:138
iterator end() noexcept
Returns an iterator to the element following the last element of the container.
Definition: translate_join.hpp:184
The return type of seqan3::views::translate_single.
Definition: translate.hpp:164
constexpr void push_back(value_type const value) noexcept
Appends the given element value to the end of the container.
Definition: small_vector.hpp:868
constexpr size_type size() const noexcept
Returns the number of elements in the container, i.e. std::distance(begin(), end()).
Definition: small_vector.hpp:590
Provides various transformation traits used by the range module.
constexpr auto translate_join
A view that translates nucleotide into aminoacid alphabet with 1, 2, 3 or 6 frames....
Definition: translate_join.hpp:383
constexpr auto translate_single
A view that translates nucleotide into aminoacid alphabet for one of the six frames.
Definition: translate.hpp:524
constexpr size_t size
The size of a type pack.
Definition: traits.hpp:151
Specifies requirements of an input range type for which the const version of that type satisfies the ...
A concept that indicates whether an alphabet represents nucleotides.
The internal SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
view_translate_join(urng_t &&, translation_frames const =translation_frames{}) -> view_translate_join< std::views::all_t< urng_t > >
Class template argument deduction for view_translate_join.
The SeqAn namespace for views.
Definition: char_strictly_to.hpp:22
translation_frames
Specialisation values for single and multiple translation frames.
Definition: translate.hpp:68
@ forward_frame2
The third forward frame starting at position 2.
@ forward_frame0
The first forward frame starting at position 0.
@ reverse_frame0
The first reverse frame starting at position 0.
@ reverse_frame2
The third reverse frame starting at position 2.
@ forward_frame1
The second forward frame starting at position 1.
@ reverse_frame1
The second reverse frame starting at position 1.
The <ranges> header from C++20's standard library.
A constexpr string implementation to manipulate string literals at compile time.
Definition of the range adaptor object type for seqan3::views::translate_join.
Definition: translate_join.hpp:268
constexpr auto operator()(urng_t &&urange, translation_frames const tf=translation_frames::six_frames) const
Directly return an instance of the view, initialised with the given parameters.
Definition: translate_join.hpp:281
constexpr auto operator()(translation_frames const tf=translation_frames::six_frames) const
Store the argument and return a range adaptor closure object.
Definition: translate_join.hpp:270
constexpr friend auto operator|(urng_t &&urange, translate_join_fn const &me)
This adaptor is usable without setting the frames parameter in which case the default is chosen.
Definition: translate_join.hpp:309
Provides seqan3::views::translate and seqan3::views::translate_single.